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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Rice-Synthethic_map
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps 2
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
QTL
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Physical [ View Map Type Info ]
Map Set Name: Rice - Synthethic_map [ View Map Set Info ]
Map Name: 2
Map Start: 0 bp
Map Stop: 35.94 bp
Features by Type:
239 Marker
110 QTL
349 Total

Map Features

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Items 1 to 25 of 349.       of 14 | Next
Rice - Synthethic_map - 2
(Click headers to resort)		 Comparative Maps
Feature Type Position (bp) Map Feature Type Position Evidence Actions
B250B Marker 16.36 - 16.364 Maize - Physical_map_IBM2 - 5 B250B Marker 160.75 - 160.76 (bp) Automated name-based, Automated name-based View Maps
RG139 Marker 27.035 No other positions
B266E Marker 23.242 - 23.245 Maize - Physical_map_IBM2 - 4 B266E Marker 132.79 (bp) Automated name-based, Automated name-based View Maps
B219B Marker 1.146 - 1.151 Maize - Physical_map_IBM2 - 5 B219B Marker 71.41 (bp) Automated name-based, Automated name-based View Maps
OsAGAP Marker 5.505 - 5.508 No other positions
B282B Marker 34.2 - 34.203 Maize - Physical_map_IBM2 - 5 B282B Marker 214.22 (bp) Automated name-based, Automated name-based View Maps
B234B Marker 6.4 - 6.402 Maize - Physical_map_IBM2 - 4 B234B Marker 231.42 (bp) Automated name-based, Automated name-based View Maps
R1483 Marker 0.745 No other positions
B259B Marker 19.488 - 19.489 Maize - Physical_map_IBM2 - 4 B259B Marker 105.88 (bp) Automated name-based, Automated name-based View Maps
RG256 Marker 33.939 No other positions
B275B Marker 29.935 - 29.941 Maize - Physical_map_IBM2 - 4 B275B Marker 163.34 - 163.35 (bp) Automated name-based, Automated name-based View Maps
B227B Marker 3.949 Maize - Physical_map_IBM2 - 4 B227B Marker 236.29 (bp) Automated name-based, Automated name-based View Maps
OsCKI1 Marker 24.767 - 24.773 No other positions
B243B Marker 8.76 - 8.766 Maize - Physical_map_IBM2 - 5 B243B Marker 141.61 - 141.62 (bp) Automated name-based, Automated name-based View Maps
AGG_CAG13 Marker 19.865 No other positions
B251B Marker 17.446 - 17.455 Maize - Physical_map_IBM2 - 5 B251B Marker 161.9 - 161.95 (bp) Automated name-based, Automated name-based View Maps
RZ58 Marker 28.689 No other positions
B267B Marker 23.433 - 23.442 Maize - Physical_map_IBM2 - 5 B267B Marker 181.27 (bp) Automated name-based, Automated name-based View Maps
B218E Marker 1.305 - 1.31 Maize - Physical_map_IBM2 - 4 B218E Marker 239.03 - 239.04 (bp) Automated name-based, Automated name-based View Maps
DOCS1 Marker 7.711 - 7.716 No other positions
B283E Marker 34.476 - 34.483 Maize - Physical_map_IBM2 - 4 B283E Marker 172.64 - 172.71 (bp) Automated name-based, Automated name-based View Maps
B236B Marker 6.573 - 6.577 Maize - Physical_map_IBM2 - 5 B236B Marker 156.3 - 156.32 (bp) Automated name-based, Automated name-based View Maps
G1327 Marker 4.525 No other positions
RM475 Marker 20.399 No other positions
B260B Marker 20.082 - 20.084 Maize - Physical_map_IBM2 - 4 B260B Marker 111.92 (bp) Automated name-based, Automated name-based View Maps